Identification of a psoriasis susceptibility candidate gene by linkage disequilibrium mapping with a localized single nucleotide polymorphism map

D Hewett, L Samuelsson, J Polding, F Enlund, D Smart… - Genomics, 2002 - Elsevier
D Hewett, L Samuelsson, J Polding, F Enlund, D Smart, K Cantone, CG See, S Chadha…
Genomics, 2002Elsevier
Psoriasis is a chronic inflammatory disease of the skin with both genetic and environmental
risk factors. Here we describe the creation of a single-nucleotide polymorphism (SNP) map
spanning 900–1200 kb of chromosome 3q21, which had been previously recognized as
containing a psoriasis susceptibility locus, PSORS5. We genotyped 644 individuals, from
195 Swedish psoriatic families, for 19 polymorphisms. Linkage disequilibrium (LD) between
marker and disease was assessed using the transmission/disequilibrium test (TDT). In the …
Psoriasis is a chronic inflammatory disease of the skin with both genetic and environmental risk factors. Here we describe the creation of a single-nucleotide polymorphism (SNP) map spanning 900–1200 kb of chromosome 3q21, which had been previously recognized as containing a psoriasis susceptibility locus, PSORS5. We genotyped 644 individuals, from 195 Swedish psoriatic families, for 19 polymorphisms. Linkage disequilibrium (LD) between marker and disease was assessed using the transmission/disequilibrium test (TDT). In the TDT analysis, alleles of three of these SNPs showed significant association with disease (P<0.05). A 160-kb interval encompassing these three SNPs was sequenced, and a coding sequence consisting of 13 exons was identified. The predicted protein shares 30–40% homology with the family of cation/chloride cotransporters. A five-marker haplotype spanning the 3′ half of this gene is associated with psoriasis to a P value of 3.8<10−5. We have called this gene SLC12A8, coding for a member of the solute carrier family 12 proteins. It belongs to a class of genes that were previously unrecognized as playing a role in psoriasis pathogenesis.
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